PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000718.1_g00009.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 224aa    MW: 24678.8 Da    PI: 8.7416
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000718.1_g00009.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.73.4e-19655255
                      AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                             +++GVr++  +g+Wv+eIr+p        kr++lg+f taeeAa+a+++a+  ++g
  Itr_sc000718.1_g00009.1  6 KFRGVRQRQ-WGSWVSEIRHP-----LlkKRIWLGTFETAEEAARAYDQAAVLMNG 55
                             89****999.**********8.....335*********************977765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.79E-33665No hitNo description
SuperFamilySSF541717.85E-21664IPR016177DNA-binding domain
PROSITE profilePS5103221.918663IPR001471AP2/ERF domain
PfamPF008471.7E-11651IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-32664IPR001471AP2/ERF domain
SMARTSM003803.3E-39669IPR001471AP2/ERF domain
PRINTSPR003679.2E-11718IPR001471AP2/ERF domain
PRINTSPR003679.2E-112945IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MVQSNKFRGV RQRQWGSWVS EIRHPLLKKR IWLGTFETAE EAARAYDQAA VLMNGQNAKT  60
NFPVAKEKSN GGGREAATTP PIPVDVLSAK LKKCCKEPAP SITCLRLDTD GGHIGVWQKK  120
SGKDSASNWL TKIELQGKNS KKTKKKATEE EQTPSPLSSS YCNSWDNIVS PSSSSSLCSS  180
NNSLGISSSD HELIIAEMDD ENRVAMQMVE ELLNWNIPNS SILN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-17764361ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008466410.12e-74PREDICTED: ethylene-responsive transcription factor SHINE 2-like
RefseqXP_008466409.12e-74PREDICTED: ethylene-responsive transcription factor SHINE 2-like
RefseqXP_008466408.12e-74PREDICTED: ethylene-responsive transcription factor SHINE 2-like
SwissprotQ9XI336e-64WIN1_ARATH; Ethylene-responsive transcription factor WIN1
TrEMBLA0A118J6I96e-77A0A118J6I9_CYNCS; AP2/ERF domain-containing protein
STRINGPGSC0003DMT4000777023e-73(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13522476
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11190.11e-52ERF family protein